PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G291400.1.p | ||||||||
Common Name | GLYMA_13G291400, LOC100792902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27673.8 Da PI: 7.9071 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.2e-14 | 63 | 109 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+++P a kKl+Ka+ L ++++++k+L Glyma.13G291400.1.p 63 KNHSEAERRRRARINAHLDTLRSVIPGA-----KKLDKATLLGEVIRHLKEL 109 58*************************9.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.418 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-11 | 63 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 63 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-14 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-13 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-4 | 73 | 111 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.1E-5 | 148 | 190 | No hit | No description |
CDD | cd04873 | 2.13E-7 | 148 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEMEAFAPHR ISDGFPVCCG VIGSGYGSSS SLVLDKEKGE LVEAPVKLER KGVSPERSIE 60 ALKNHSEAER RRRARINAHL DTLRSVIPGA KKLDKATLLG EVIRHLKELK TNATQASEGL 120 MIPKDSDEIR VEEQEGGLNG FPYSIKASLC CEYKPGLLTD IRQALDALHL MIIRAEIATL 180 GGRMNSVFVI ISCKEQNIED PEYRQFLAGS VHQALRSVLD RFSVSQDMLE SRKRRRISIF 240 SSSSIGDFF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 235 | RKRRR |
2 | 232 | 236 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.53277 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G291400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541890.2 | 0.0 | transcription factor bHLH30 | ||||
Refseq | XP_028187680.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A445IC13 | 0.0 | A0A445IC13_GLYSO; Transcription factor bHLH30 isoform A | ||||
TrEMBL | K7M2J7 | 0.0 | K7M2J7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G36741.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G291400.1.p |
Entrez Gene | 100792902 |