PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G289400.1.p | ||||||||
Common Name | GLYMA_13G289400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 266aa MW: 28727.9 Da PI: 6.2864 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.8 | 2.5e-29 | 77 | 135 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ +++tY eHnh+ Glyma.13G289400.1.p 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLIVTYAYEHNHS 135 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-31 | 69 | 137 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 73 | 137 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-35 | 76 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.697 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-25 | 78 | 134 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MHHRRFSKLI HVADPDEPES GPEPASEAGP ASPSSGEDTK TEAPSPKKRR EMKKRVVTIP 60 IGDVDGSKSK GENYPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRVD 120 PTKLIVTYAY EHNHSLPLPK SNSSAASAAV SDGATSSSPA DSAARYPPEE EMKVFATDSD 180 LELAGDAAVL LSHHHHHHFG WFDDVTSTGV LESPICGEVD DVAVPMREED ESLFADLGEL 240 PECSAVFRRM NIPATSAIRC GGITG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-18 | 54 | 137 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-18 | 54 | 137 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30914 | 0.0 | flower| hypocotyl| root| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G289400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019587 | 0.0 | EU019587.1 Glycine max WRKY52 (WRKY52) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237726.2 | 0.0 | WRKY transcription factor 52 | ||||
Swissprot | Q93WV5 | 3e-69 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | I1M3K3 | 0.0 | I1M3K3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G36540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 2e-64 | WRKY DNA-binding protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G289400.1.p |
Publications ? help Back to Top | |||
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