PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.13G284400.1.p | ||||||||
Common Name | GLYMA_13G284400, LOC100778697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 461aa MW: 50714.7 Da PI: 6.5313 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.6e-06 | 351 | 389 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Glyma.13G284400.1.p 351 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 389 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.481 | 340 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.40E-7 | 350 | 393 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-11 | 350 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0025 | 351 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-10 | 354 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 461 aa Download sequence Send to blast |
MADNDQFQAS GNWWETARSV RYESGASQSS SSAITNIGNN FGWQQGSDMA DMKPRSSMDS 60 SSVVFHDTQN NKLQQPDSAT STDPNLHMMG LGLSSQTMDW NQASLLRGEK GTENSFRSML 120 QENLSSSRTN FQQETGNMGL SQQVQWRSEK MFSSESSTNE FKQVNNRGGG GFSLDQSQFS 180 PQYSSGDSTV TSQGLPSSNF QIDSSALYGT PSILQGLLGP DHNNQPQQQQ PMSFPYQTTS 240 YGLNSNELVP SWSKVPQFLR ASPPKQPPNN QLHFTNNATF WNDSEAANNK DVRPSFFPSL 300 QPPFSTPNFE VQSKNISEVR ESGTVVKKSG NEPAPKRTRN ESPSPLPAFK VRKEKMGDRI 360 TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVTALSTPY MKSGAPMQIQ QNSGKSKEAE 420 GPKQDLRSRG LCLVPVSSTF PVTHETTVDF WTPTFGGTSR * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.28110 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.13G284400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-174 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541866.1 | 0.0 | transcription factor bHLH123 | ||||
Refseq | XP_028191867.1 | 0.0 | transcription factor bHLH123-like isoform X1 | ||||
Refseq | XP_028191868.1 | 0.0 | transcription factor bHLH123-like isoform X1 | ||||
Swissprot | Q8GXT3 | 6e-92 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A445IB97 | 0.0 | A0A445IB97_GLYSO; Transcription factor bHLH123 isoform A | ||||
TrEMBL | K7M2F9 | 0.0 | K7M2F9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G36010.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20640.1 | 6e-80 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.13G284400.1.p |
Entrez Gene | 100778697 |
Publications ? help Back to Top | |||
---|---|---|---|
|