PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G282100.1.p
Common NameGLYMA_13G282100, LOC100820398
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 381aa    MW: 42432.6 Da    PI: 8.7546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G282100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+d+++++G g W+t ++  g++R++k+c++rw +yl
  Glyma.13G282100.1.p 13 KGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYL 60
                         79********************************************97 PP
2Myb_DNA-binding53.94.1e-1766110147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  lG++ W+tIa+ ++ gRt++++k++w+++
  Glyma.13G282100.1.p  66 RGRFSFEEEEAIIQLHSVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 110
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25663IPR009057Homeodomain-like
PROSITE profilePS5129419.358860IPR017930Myb domain
SuperFamilySSF466891.91E-3110107IPR009057Homeodomain-like
SMARTSM007172.0E-151262IPR001005SANT/Myb domain
PfamPF002493.4E-171360IPR001005SANT/Myb domain
CDDcd001671.05E-121560No hitNo description
PROSITE profilePS5129426.1261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2664115IPR009057Homeodomain-like
SMARTSM007173.4E-1665113IPR001005SANT/Myb domain
PfamPF002491.1E-1466110IPR001005SANT/Myb domain
CDDcd001675.47E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAKSSTEKNG LKKGPWTPEE DQKLIDYIQK HGHGKWRTLP KNAGLKRCGK SCRLRWANYL  60
RPDIKRGRFS FEEEEAIIQL HSVLGNKWST IAANLPGRTD NEIKNYWNTH IKKKLLKMGI  120
DPVTHTPRLD VIQLASILNT SLYNSAPQFN YPSLSGIGRS VINPSHMLGL LTTLLSCQNR  180
NYNPDVLNNN QLSGGSTLLQ NQHQCSRMQL DSTQAFQPNQ PQVSLQENHI AKSNSNPLNM  240
EPQVMKTTLE NQITPIATPF SQQNTLPNLW HYNTEGHISD LPTMAQSSSA MQCFSSPKFN  300
SIYNNLLENQ NLCNNNEGMP NFNLSSLLSS TPSSSSPIST LNSSSSTTFV NGTTEDERDT  360
YGSSMLMYNI SNGLNDSGLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31111155108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.1600.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G282100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312010.0KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541861.10.0transcription factor MYB41
RefseqXP_028189358.10.0transcription factor MYB41-like
TrEMBLA0A445IB520.0A0A445IB52_GLYSO; Transcription factor MYB102
TrEMBLK7M2E60.0K7M2E6_SOYBN; Uncharacterized protein
STRINGGLYMA13G35810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.19e-90MYB-like 102