PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G274900.1.p | ||||||||
Common Name | GLYMA_13G274900, LOC100815775 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 188aa MW: 21157.6 Da PI: 8.6668 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.8 | 4.7e-41 | 66 | 142 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e C adl+ ak+yhrrhkvCe hskap+v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a Glyma.13G274900.1.p 66 CQAEICGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNA 142 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-35 | 58 | 127 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.975 | 63 | 140 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-37 | 64 | 144 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.6E-32 | 66 | 139 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEIKSGERRQ VSIEKVRRDN TVEVEDEEEE DESVVGGEGG LAEDERKKIG GGSGRRGSSG 60 VSPPSCQAEI CGADLTVAKR YHRRHKVCEL HSKAPSVMVA GLRQRFCQQC SRFHELAEFD 120 EAKRSCRRRL ARHNERRRKS NAETCNEGCS GSKGQHPAET HCRNTDDWGR IQMNIAKNSG 180 YKFFHIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-35 | 54 | 139 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G274900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098928 | 0.0 | BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543233.1 | 1e-135 | squamosa promoter-binding protein 1 | ||||
Refseq | XP_028190356.1 | 1e-135 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 8e-40 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A445IB34 | 1e-134 | A0A445IB34_GLYSO; Squamosa promoter-binding protein 1 | ||||
TrEMBL | I1M360 | 1e-134 | I1M360_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G35000.1 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-29 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G274900.1.p |
Entrez Gene | 100815775 |
Publications ? help Back to Top | |||
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