PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G271700.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 394aa    MW: 41777.4 Da    PI: 7.23
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G271700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.25.9e-34211262104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+ +                          
  Glyma.13G271700.1.p  21 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSSIDQLAHLppwkptlpspapphlnddhsdkpnpn 110
                          79**************************************************************88886654322222222222222211 PP

                  TCP  66 ......ssssaseceaesssssasnsssgkaaksaakskksqksa 104
                                +                             +++++++++
  Glyma.13G271700.1.p 111 pnpnpnP-----------------------------NPNPNHSPD 126
                          1111110.............................222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.9E-312184IPR005333Transcription factor, TCP
PROSITE profilePS5136933.252381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVRGSGGEIV QVEGGHIVRS TGRKDRHSKV CTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL INKAKSSIDQ LAHLPPWKPT LPSPAPPHLN DDHSDKPNPN PNPNPNPNPN  120
PNHSPDAQIL NQFDHDDGAG AGSSYLPMDN DAIRSFFPTT TSSLVQFQSY PPDLLSRTSS  180
QDLRLSLQSL QDPILLHHNH NNNEHVLFAG TAFDNMVAWN NNSNNNHNNN NHNNNNNNNN  240
NNNTASNDTC GGGGGGGGGG GGGGGGFVFN APSTLPGPAT VASPTVVFGH GYGQGQYFSQ  300
RGPLQSSNSP SVRAWIDAPS FVAAAADHRH HHYLSPAAAA AALVYQSAPP TAAFTAAPGG  360
FSGFRVPARI QGEEEHDGGM SDKPSSASSD SRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-202881154Putative transcription factor PCF6
5zkt_B3e-202881154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.420330.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G271700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621369.10.0transcription factor TCP4
TrEMBLA0A0R0GUP40.0A0A0R0GUP4_SOYBN; Uncharacterized protein
STRINGGLYMA13G34690.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-48TCP family protein