PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G267700.1.p
Common NameGLYMA_13G267700, LOC102659367
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 271aa    MW: 30601.3 Da    PI: 6.164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G267700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.3e-24132192259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK   ++++ rsYYrCt++   gCp++k+v+r++edp +  +tY g+Hn++
  Glyma.13G267700.1.p 132 EDGYAWRKYGQKITLNAKYLRSYYRCTHKydqGCPATKQVQRTQEDPPLYRTTYYGHHNCK 192
                          8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-26118192IPR003657WRKY domain
PROSITE profilePS5081121.999126194IPR003657WRKY domain
SuperFamilySSF1182901.83E-24128192IPR003657WRKY domain
SMARTSM007742.1E-37131193IPR003657WRKY domain
PfamPF031063.0E-24132192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MENQPSNGKR AMEEELIKGC ETANQLLEVL VHKSNTTHED VELEGSVQPL VEDLVRKVLC  60
SFTNTLLLLN TNNINDVSKY TIKDAPSSVK CPETQGTDEA CKSFFHAEKR RGCYKRKSSA  120
PTWETNSSIL LEDGYAWRKY GQKITLNAKY LRSYYRCTHK YDQGCPATKQ VQRTQEDPPL  180
YRTTYYGHHN CKSSLSPEIM MEPAFSSGSS MILSFTSTLT SKEGYPFSSS LSSSTKLEPM  240
EVIQDDHIVQ NQLSSSDYLL LSDYGLDFNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-21131192869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G267700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594723.20.0probable WRKY transcription factor 70
TrEMBLK7M2590.0K7M259_SOYBN; Uncharacterized protein
STRINGGLYMA13G34281.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-30WRKY DNA-binding protein 70