PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G267500.1.p
Common NameGLYMA_13G267500, LOC102663281
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 297aa    MW: 33864.9 Da    PI: 6.2576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G267500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.32.8e-22134194259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy WrKYGqK+  ++++ rsYYrC+++   gC++ k+v+r +++p +  +tY g+H+++
  Glyma.13G267500.1.p 134 EDGYVWRKYGQKMTLNAKYLRSYYRCSHKndqGCQAMKQVQRIQDNPPLYRTTYYGHHTCR 194
                          8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.736128196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-24128196IPR003657WRKY domain
SuperFamilySSF1182901.57E-23130196IPR003657WRKY domain
SMARTSM007744.5E-34133195IPR003657WRKY domain
PfamPF031067.5E-23134194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MENQNQLPNG KNAMEEELIR GRDMANQILE VLAHDKDEGS TNSKSVLPFV EDLVRKVLCS  60
FTNTLLLLNS NNDVSYEVVA SIAPKHVSSS TSSPKLESSD ETCKSLMNTK TRRRGYKRKS  120
IAPAWEKDSS ILIEDGYVWR KYGQKMTLNA KYLRSYYRCS HKNDQGCQAM KQVQRIQDNP  180
PLYRTTYYGH HTCRSPLNPE IILEPISPSA SSTLLSFNNS FQRQQESPFP SSLLASTKQE  240
PVEVIQDYHS AQNQLSSPED LLLYDYDFFF DYSKRVASLS STETVEFENV YEQFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19133194869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRGYKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G267500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595435.10.0probable WRKY transcription factor 70
RefseqXP_028188964.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A445IB200.0A0A445IB20_GLYSO; Putative WRKY transcription factor 70
TrEMBLK7M2560.0K7M256_SOYBN; Uncharacterized protein
STRINGGLYMA13G34251.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-27WRKY DNA-binding protein 38