PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G267400.1.p
Common NameGLYMA_13G267400, LOC102663141
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 295aa    MW: 33765.9 Da    PI: 6.5825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G267400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.62.6e-23132193159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK+  ++++ r+YYrCt++   gC ++k+v+r +edp + ++tY g+Hn++
  Glyma.13G267400.1.p 132 MEDGYAWRKYGQKMTMNAKYLRNYYRCTHKydqGCLATKQVQRIQEDPPLYHTTYYGHHNCK 193
                          58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-25120193IPR003657WRKY domain
PROSITE profilePS5081121.333127195IPR003657WRKY domain
SuperFamilySSF1182901.28E-23129193IPR003657WRKY domain
SMARTSM007747.7E-36132194IPR003657WRKY domain
PfamPF031062.8E-22133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENQPSNGRK AIEEELIKGR DIANQLLEIL APKSNTTQHK GVEVEALVLP FAEDLVRKVL  60
RSLTNTLLLL NTHSDHVSDE VVLPVTIKGV SSSVKCQKPE YKDESFNAKR RSGSYKRKSS  120
APTWEKNSSI LMEDGYAWRK YGQKMTMNAK YLRNYYRCTH KYDQGCLATK QVQRIQEDPP  180
LYHTTYYGHH NCKSSLMLEP ASSSDSSMFL SFSNTFPNKA EYPFSSSLYS SMKQEPMEVI  240
HEDHIVHNQL PSSDYHMLCD YDLDFNYSRY GTMLSSTESV QFDEVCRSDQ EFDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19132193869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G267400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2543241e-82AC254324.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb015-K06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595434.10.0probable WRKY transcription factor 70 isoform X1
TrEMBLK7M2550.0K7M255_SOYBN; Uncharacterized protein
STRINGGLYMA13G34240.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-24WRKY DNA-binding protein 70