PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G251000.1.p
Common NameGLYMA_13G251000, LOC100807745
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 449aa    MW: 49235.5 Da    PI: 4.9882
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G251000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.75.7e-36199297197
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                          k+fqrlwseeDe+++ +G+++f++ktg +p +  +++af++fvkks++++vs +ql eK+rrLKkKf+++  k k+g+ p+fsk+hdqk 
  Glyma.13G251000.1.p 199 KKFQRLWSEEDELAIVKGVVEFTSKTGLDPLKfpNTNAFHDFVKKSLHVEVSCNQLKEKVRRLKKKFETQAGKGKNGEAPKFSKPHDQKF 288
                          68**************************877666******************************************************** PP

               DUF573  89 felskkiWg 97 
                          felskk+Wg
  Glyma.13G251000.1.p 289 FELSKKVWG 297
                          ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.7E-34201297IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAQKQKLRPS PLDEPPTASS SDSEEEEPQQ QQPSSQKNKE EEDEEVSSGE EEEEDEEEEE  60
AASSEEEEED EDLPPPPVSK NPPPPPANPQ PQHSSSESET ESGSETESEP DPTPVKVKPL  120
ASKPMDQAQK PKAQPSPAPP PKLTLKRPAE NNNNNARVAD SKRAKKKATE SSSAANSAAA  180
AASDDEMEED GKKSGDNSKK FQRLWSEEDE LAIVKGVVEF TSKTGLDPLK FPNTNAFHDF  240
VKKSLHVEVS CNQLKEKVRR LKKKFETQAG KGKNGEAPKF SKPHDQKFFE LSKKVWGREV  300
TAGANGGPVE KPKSNGSAVK SPKKKESGSR NVASAKKPKP ESKPEPVPVL SLEYKDSEKM  360
QINQKPDGGD ASLFLRELAR SKEGASICKL DEDDVKRGLE LIGESKRAEL RGKWKKLHLA  420
EMELFANRSE LIGEQTKLIL EALQASDH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362380.0root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G251000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971044e-37BT097104.1 Soybean clone JCVI-FLGm-26C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541767.10.0STOREKEEPER protein
RefseqXP_028188775.10.0STOREKEEPER protein-like
TrEMBLA0A445I9S70.0A0A445I9S7_GLYSO; Putative transcription factor isoform A
TrEMBLK7M1T50.0K7M1T5_SOYBN; Uncharacterized protein
STRINGGLYMA13G32440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Representative plantOGRP4222523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.18e-27DNA-binding storekeeper protein-related transcriptional regulator