PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G243200.1.p
Common NameGLYMA_13G243200, LOC100792372
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 364aa    MW: 40637.1 Da    PI: 8.7959
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G243200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-53191471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +++ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk
  Glyma.13G243200.1.p  19 LPPGFRFHPTDEELVVQYLKKKADSVPLPV-SIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDK 107
                          79****************************.89***************988899************************************ PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l++  ++++vg+kk+Lvfy g+ pkg+kt+W+mheyrl
  Glyma.13G243200.1.p 108 PILAShgHHNKVGVKKSLVFYGGKPPKGVKTNWIMHEYRL 147
                          ***99777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-6314187IPR003441NAC domain
PROSITE profilePS5100560.98919187IPR003441NAC domain
PfamPF023651.3E-2720147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYSMDSSSSG SQFSQHPQLP PGFRFHPTDE ELVVQYLKKK ADSVPLPVSI IAEVDLYKFD  60
PWELPSKATF GDQEWYFFSP RDRKYPNGTR PNRAATSGYW KATGTDKPIL ASHGHHNKVG  120
VKKSLVFYGG KPPKGVKTNW IMHEYRLADS SSNSSSKPPS SASDHAHSGK KNSLRLDDWV  180
LCRIYKKSNS THLPRLPLME QNKEISREIS MLPMMSTLSM ANDNNTPQDS KTASSRSTSY  240
GPLGVENDDN FFDGIFGVDH QSMQQDVSDH SQQVSSKGNF PMKRELSSQF WNGTGSSSSS  300
RQFHYDLNYA GNSTTVEEDN SFVSLLSHLP QNTTTFHPNA LLGPVGNGVL RQQFQLPSMN  360
WNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-721919217170NO APICAL MERISTEM PROTEIN
1ut4_B1e-721919217170NO APICAL MERISTEM PROTEIN
1ut7_A1e-721919217170NO APICAL MERISTEM PROTEIN
1ut7_B1e-721919217170NO APICAL MERISTEM PROTEIN
3swm_A1e-721919220173NAC domain-containing protein 19
3swm_B1e-721919220173NAC domain-containing protein 19
3swm_C1e-721919220173NAC domain-containing protein 19
3swm_D1e-721919220173NAC domain-containing protein 19
3swp_A1e-721919220173NAC domain-containing protein 19
3swp_B1e-721919220173NAC domain-containing protein 19
3swp_C1e-721919220173NAC domain-containing protein 19
3swp_D1e-721919220173NAC domain-containing protein 19
4dul_A1e-721919217170NAC domain-containing protein 19
4dul_B1e-721919217170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.78081e-33leaf| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G243200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541742.10.0NAC transcription factor 25
RefseqXP_028188975.10.0NAC transcription factor 25-like
SwissprotQ8GY421e-109NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A445I9I10.0A0A445I9I1_GLYSO; NAC transcription factor 25
TrEMBLK7M1M90.0K7M1M9_SOYBN; Uncharacterized protein
STRINGGLYMA13G31660.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-103NAC domain containing protein 25