PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G237400.1.p | ||||||||
Common Name | GLYMA_13G237400, LOC100782285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 139aa MW: 15897.4 Da PI: 7.1505 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 138.9 | 1.4e-43 | 57 | 133 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC+adlseak yhrrhkvCe h+kap+v++ +++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++ Glyma.13G237400.1.p 57 CQVDGCNADLSEAKPYHRRHKVCEYHAKAPAVVIGDQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNAS 133 **************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF037575 | 1.1E-58 | 2 | 138 | IPR017238 | Squamosa promoter-binding protein |
Gene3D | G3DSA:4.10.1100.10 | 7.7E-37 | 50 | 118 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.684 | 54 | 131 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.03E-40 | 55 | 135 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-34 | 57 | 130 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MDGSWSEGKR SMSYKEEDEY EEEEEEEVSE YGDDGKKKRV VSNKRGSKAG GSVPPSCQVD 60 GCNADLSEAK PYHRRHKVCE YHAKAPAVVI GDQHQRFCQQ CSRFHELSEF DDSKRSCRRR 120 LAGHNERRRK NASEYHGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-36 | 49 | 130 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G237400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 5e-77 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541730.1 | 1e-97 | squamosa promoter-binding protein 1 isoform X1 | ||||
Refseq | XP_028189121.1 | 1e-97 | squamosa promoter-binding protein 1-like | ||||
Swissprot | Q38741 | 2e-48 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A445I985 | 2e-96 | A0A445I985_GLYSO; Squamosa promoter-binding-like protein | ||||
TrEMBL | I1M219 | 2e-96 | I1M219_SOYBN; Squamosa promoter-binding-like protein | ||||
STRING | GLYMA13G31090.1 | 4e-97 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-40 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G237400.1.p |
Entrez Gene | 100782285 |
Publications ? help Back to Top | |||
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