PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G233800.1.p
Common NameGLYMA_13G233800, LOC100820226
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 266aa    MW: 29493 Da    PI: 5.2706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G233800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20123173255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd s+   + +r++lg+f+taeeAa a+++a+++++g
  Glyma.13G233800.1.p 123 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFDTAEEAALAYDKAALRIRG 173
                          8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-32122182IPR001471AP2/ERF domain
CDDcd000182.36E-30122181No hitNo description
PROSITE profilePS5103224.065123181IPR001471AP2/ERF domain
PfamPF008475.0E-15123173IPR001471AP2/ERF domain
SMARTSM003801.4E-37123187IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-24123182IPR016177DNA-binding domain
PRINTSPR003672.4E-11124135IPR001471AP2/ERF domain
PRINTSPR003672.4E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDIHSNHGAT SEGILENVWA KIMSSDGADG RKGDAAESSN SWEELPNLDG REGSMEILQR  60
LPSLGRWISM GADFWEEVLD GIILPNTSNR EDSSHNNLEI GSANETRNKV EDALRIEKAI  120
TKHYRGVRRR PWGKYAAEIR DSSKKGARVW LGTFDTAEEA ALAYDKAALR IRGPKAYLNF  180
PLERGANALA CDHKGTNHLA CTCIGNKEKL INSRKRASME REAFDDMVNE QPATKKLECM  240
VENELGAFVF QDLGSDYLDS LLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-29122182464ATERF1
3gcc_A7e-29122182464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G233800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541718.10.0ethylene-responsive transcription factor ERF091
RefseqXP_028186689.10.0ethylene-responsive transcription factor ERF091-like
TrEMBLA0A445I9250.0A0A445I925_GLYSO; Ethylene-responsive transcription factor ERF091
TrEMBLI1M1X70.0I1M1X7_SOYBN; Uncharacterized protein
STRINGGLYMA13G30710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-32ERF family protein