PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G223300.1.p
Common NameGLYMA_13G223300, LOC732595
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27641.2 Da    PI: 10.0561
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G223300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Glyma.13G223300.1.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                         79***********************************************8 PP
2K-box116.23.1e-38921885100
                K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          sg   ++ea+a+ +qqe++kL+++i+nLq+++R+++G++L+sL+ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ 
  Glyma.13G223300.1.p  92 SGAGsASEANAQFYQQEADKLRQQISNLQNNNRQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQL 181
                          33445899********************************************************************************** PP

                K-box  94 Lrkklee 100
                          Lr+k++e
  Glyma.13G223300.1.p 182 LRAKIAE 188
                          ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
CDDcd002656.07E-451786No hitNo description
SuperFamilySSF554553.01E-331789IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-331838IPR002100Transcription factor, MADS-box
PfamPF003199.0E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-335374IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2899186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.106102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAFPDPSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKASSD SSGAGSASEA NAQFYQQEAD KLRQQISNLQ  120
NNNRQMMGDS LGSLTAKDLK NLETKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAESE RNHHNMAVLP GGSNYDSMQS SQQQFDSRGY FQVTGLQPNN QYARQDQMSL  240
QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211688173Myocyte-specific enhancer factor 2B
1tqe_Q2e-211688173Myocyte-specific enhancer factor 2B
1tqe_R2e-211688173Myocyte-specific enhancer factor 2B
1tqe_S2e-211688173Myocyte-specific enhancer factor 2B
6c9l_A2e-211688173Myocyte-specific enhancer factor 2B
6c9l_B2e-211688173Myocyte-specific enhancer factor 2B
6c9l_C2e-211688173Myocyte-specific enhancer factor 2B
6c9l_D2e-211688173Myocyte-specific enhancer factor 2B
6c9l_E2e-211688173Myocyte-specific enhancer factor 2B
6c9l_F2e-211688173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268440.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G223300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237504.10.0MADS-box protein
RefseqXP_028188360.10.0floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028188361.10.0floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028188362.10.0floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408721e-134AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A445I8U31e-179A0A445I8U3_GLYSO; Floral homeotic protein AGAMOUS isoform A
TrEMBLQ2TUV51e-179Q2TUV5_SOYBN; MADS-box protein
STRINGGLYMA13G29510.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-112MIKC_MADS family protein