PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G213400.1.p | ||||||||
Common Name | GLYMA_13G213400, LOC100776034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 777aa MW: 86783.3 Da PI: 6.8477 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.5 | 2.9e-36 | 113 | 189 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Ce+d+se+k yhrrh+vC +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k Glyma.13G213400.1.p 113 RCQVPACEVDISELKGYHRRHRVCLRCANAATVMLNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKP 189 6***********************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-27 | 108 | 175 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.333 | 111 | 188 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.76E-33 | 112 | 190 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.2E-27 | 114 | 188 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MEPLSLPPLP VMDDAEDPSS IWDFSYLLDF DLDDQDIIIN NNNSLPLPLN DHPAPSEIPQ 60 NDRVRKRDPR LTCSNFLAGR VPCACPELDA ILEDEGLPGK KRARTARASA SARCQVPACE 120 VDISELKGYH RRHRVCLRCA NAATVMLNGE AKRYCQQCGK FHVLSDFDEG KRSCRRKLER 180 HNTRRRRKPT ADSGGATHSE LLQPVAENEE NNYDVEAGKD CSNLSTDIND VGVSLDLEDE 240 PAPIPSSAPE AQNINSDSVV SLAVSGETRV NSGNTSNSPS YCDNKSAYSS MCQTGRISFK 300 LYDWNPAEFP RRLRHQIFQW LASMPVELEG YIRPGCTILT IFIAMPNIMW INLLKDPLEY 360 VHDIVAPGKM LSGRGTALVH LNDMIFRVMK DGTSVTNVKV NMHAPKLHYV HPTYFEAGKP 420 MEFVACGSNL LQPKFRLLVS FSGKYLKCEY CVPSPHSWTE DNISCAFDNQ LYKIYVPHTE 480 ESLFGPAFIE VENESGLSNF IPVLIGDKKI CTEMKTLQQK LDVSLLSKQF RSASGGSICS 540 SCETFALSHT SSSDLLVDIA WLLKDTTSEN FDRVMTASQI QRYCHLLDFL ICNDSTIILG 600 KILPNLIILT ESMKSNVVIN RTSDVDIMQL LNHIHNARNA VYQKHPKSES IIVHSEMKGF 660 ILAQGCSQDN KLSVAINSQG IQSRADEKWG VLKVKSPTSN EKMERIPLLK RDIIMSMEEL 720 PERYGRRCLG RGFLTFRPAI FVLVSVAVCL GVCVAVLHPG RVSELAVSVR RCLFNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 5e-43 | 112 | 195 | 4 | 86 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 186 | RRKLERHNTRRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19221 | 0.0 | cotyledon| flower| leaf| meristem| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G213400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541650.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | K7M106 | 0.0 | K7M106_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G28460.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6470 | 34 | 50 | Representative plant | OGRP4828 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G213400.1.p |
Entrez Gene | 100776034 |