PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G204400.3.p | ||||||||
Common Name | GLYMA_13G204400, LOC100795896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 48273.3 Da PI: 8.6106 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.7e-13 | 371 | 416 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l Pk+ +k s a++L +AveYIk+Lq Glyma.13G204400.3.p 371 SIAERERRTRISARIKKLQDLFPKS----DKQTSTADMLDLAVEYIKDLQ 416 689*********************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.259 | 365 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-14 | 368 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.15E-11 | 369 | 420 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 370 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-10 | 371 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-11 | 371 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MSIVYSHAVK YSRGETRMNP EMDSNIGQHC HQQNSGLMRY RSAPSSLLTS LVNNNNNNNG 60 YVNGESFRSE HNHHHHQQQQ QQHYPPSTSS EMENMLAKLI SSNNSEPLQM KEEAGDSVSQ 120 PPQQHNGYSY GSSPQMMYQT QQIQGLPIPN GSLGASGSAF DGSFSAVNSL ASQNSTQPKM 180 GASTNCNNLI RQKSSPAGFF SNYSVDNALR DVASFRGCDV SNGQAITSSS GLHGTLNFSS 240 RPSSCSTRMP QIAENGNEDV EANCVESRNL RNDNINNTKC YMPSFTTDFW DGSAFSASRT 300 ASNSGEISFS TSKAMDIQDE DFGYQKVGLT HHLSLPGSSS RMATMEKLYQ IQGSVPCKIR 360 AKRGFATHPR SIAERERRTR ISARIKKLQD LFPKSDKQTS TADMLDLAVE YIKDLQKQVK 420 ILRDTRAKCT CTSNQKH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.5083 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G204400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099179 | 0.0 | BT099179.1 Soybean clone JCVI-FLGm-26J2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594420.1 | 0.0 | transcription factor bHLH130 isoform X2 | ||||
TrEMBL | K7M0V4 | 0.0 | K7M0V4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G27455.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G204400.3.p |
Entrez Gene | 100795896 |