PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G202300.1.p
Common NameGLYMA_13G202300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 305aa    MW: 34014.7 Da    PI: 9.3405
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G202300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.6e-32148204158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rkpylheSRh hA+rR+Rg+gGrF
  Glyma.13G202300.1.p 148 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKNRKPYLHESRHLHAMRRARGNGGRF 204
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-37146207IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.055147207IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.5E-28149204IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24150172IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860152172IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24181204IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPGKADTDDW RVERGEQIQF QSSIYSHHQP WRCGVGENAS KSSSADQLNG SIVNGITRSE  60
TNDKSGEGVA KEYQNIKHAV LSTPFTMDKH LAPNPQMELV GHSVVLTSPY SDAQHGQILT  120
TYGQQVMINP QLYGMYHARM PLPPEMEEEP VYVNAKQYHG ILRRRQSRAK AELEKKVIKN  180
RKPYLHESRH LHAMRRARGN GGRFLNKKKL ENYNSDATSD IGQNTGANPS TNSPNTQHLF  240
TNNENLGSSN ASQATVQDMH RVESFNIGYH NGNGLAELYH SQANGKKEGN CFGKERDPNN  300
GAFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20148208262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.330790.0cotyledon| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G202300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976640.0BT097664.1 Soybean clone JCVI-FLGm-22I24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242813.20.0nuclear transcription factor Y subunit A-13
TrEMBLI1M0X40.0I1M0X4_SOYBN; Uncharacterized protein
STRINGGLYMA13G27230.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.48e-38nuclear factor Y, subunit A1