PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G197300.2.p | ||||||||
Common Name | GLYMA_13G197300, LOC100777812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 320aa MW: 34173.9 Da PI: 8.0081 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 173.2 | 1.3e-53 | 122 | 278 | 7 | 154 |
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklss 93 CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvpa+ rr + ++++ askr r+l k+ ++sa+s++++s+ Glyma.13G197300.2.p 122 VCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSS----GGDGNSDAGASKRLRTLgssKNVAASATSHSSTSN 207 7*******************************************9643333....33334445555555555333566788889999999 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a+++k+++tss lP++v+++avfrc rvs++ ge+e+ Y ++v+i+GhvfkG+Lyd+G+++ Glyma.13G197300.2.p 208 ATPTKSFDTSScqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADA 278 999999999999999*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 5.6E-25 | 122 | 164 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 4.5E-51 | 122 | 277 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 3.0E-21 | 229 | 275 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MNMLGLRDLV FIAPTPSQLH HHQQHQPISA EHHSNLPLPS QASLSVGLGI FPLLTVPHTN 60 DVQVQVQDCA NNNNNTNTNY WNLKMCGATE VNSTRKGVMN MEDEGSNKQM MESEEGGGEF 120 RVCQDCGNRA KRDCSFRRCR TCCKGRGFDC STHVKSTWVP ASMRRGGGGD SSGGDGNSDA 180 GASKRLRTLG SSKNVAASAT SHSSTSNATP TKSFDTSSCQ QDAGFKQSLP RHVRAPAVFR 240 CHRVSAIGSG EDEIVYMATV HISGHVFKGF LYDHGADARN DVPSVSELQL GNNGSGKNNN 300 RECSSAIGVP TSAYPASVC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36127 | 0.0 | flower| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G197300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097346 | 0.0 | BT097346.1 Soybean clone JCVI-FLGm-16G15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542825.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | I1M0S8 | 0.0 | I1M0S8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G26730.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-48 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G197300.2.p |
Entrez Gene | 100777812 |