PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G193700.1.p
Common NameGLYMA_13G193700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 470aa    MW: 51990 Da    PI: 6.3642
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G193700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09182224345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Glyma.13G193700.1.p 182 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 224
                          568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.8E-8174227No hitNo description
PfamPF077166.8E-7180226IPR004827Basic-leucine zipper domain
SMARTSM003388.7E-8180243IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415182226IPR004827Basic-leucine zipper domain
CDDcd147084.28E-23184236No hitNo description
SuperFamilySSF579597.5E-7184227No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
PfamPF141442.7E-33266341IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGSRTTWRVV GVEDDKGAER GMPSFNSELP NSNSCYTEGN TIDSFRVSDF GAFDQSYHIE  60
DAVDLSGNPV YNSLKVNSQT ISPGSVHISS LGQLPISLEK SPLTNQTEPP HRLRLQKVQS  120
SNPGTILVGN TDNWEESTMA DASPRTDIST DGDTDDKNHP FDRNQALTAV SDSSDRSKDK  180
SDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSSGDQ  240
AHTLSGNGAM QFDAEYARWL EEQNRQINEL RAAVNSHASD TELRMIVDGI LAHYDEIFRL  300
KGVAAKADVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL VSQLEPLTEQ QLMGITNLQQ  360
SSQQAEDALS QGMEALQQSL AETLSTGAPA SSGSSGNVAS YMGQMAMAMG KLGTLEGFIQ  420
QADNLRQQTL QQMHRILTTR QSARALLAIH DYISRLRALS SLWLARPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37270.0hypocotyl| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G193700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963110.0BT096311.1 Soybean clone JCVI-FLGm-25J1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237963.20.0bZIP transcription factor bZIP99
RefseqXP_028189404.10.0transcription factor TGA6-like isoform X3
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0R0GZ650.0A0A0R0GZ65_SOYBN; Uncharacterized protein
TrEMBLA0A445I7270.0A0A445I727_GLYSO; Transcription factor TGAL1 isoform A
STRINGGLYMA13G26280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]