PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G172700.1.p
Common NameGLYMA_13G172700, LOC100778000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 390aa    MW: 43249.1 Da    PI: 7.4808
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G172700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1755115257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  Glyma.13G172700.1.p  55 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 115
                          89*****************99*************************************995 PP
2Wus_type_Homeobox110.96.8e-3654116264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k
  Glyma.13G172700.1.p  54 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 116
                          689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-741114IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1248120IPR009057Homeodomain-like
PROSITE profilePS5007110.2251116IPR001356Homeobox domain
SMARTSM003892.7E-853120IPR001356Homeobox domain
CDDcd000865.55E-854116No hitNo description
PfamPF000465.1E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSSSNRHWPS MFKSKPCNNP HNQWHHDINS SIVSTGCQRS PYANSGGDER TPEPKPRWNP  60
KPEQIRILEA IFNSGMVNPP RDEIRKIRVQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRHF  120
QNTKNQNNAE AQQQHRVDAS SSLSQTTPLS SSSSSSDKSS SKELAYNPNG FSFGFSNVND  180
VAVPNSPTAS VNQTYFHPHN HSDNNLLPQE PFSFTMHNNN GQGFVDNNTI TTLGFSVPQF  240
SSNMMQSQLQ CQQNVGSCTS LLLSEIMSHG TFSKKDQDKA LKIMHPQLSN FPLTSTPTTI  300
IAPPISTVLD PSPITQLEGV GEVAAGDRAK CITVFINDVV FEIVMGPFNV RQAFGDEAVL  360
IHSSGNPVPT DEWGITLHPL HHGACYYLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G172700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541514.10.0WUSCHEL-related homeobox 9
RefseqXP_028186982.10.0WUSCHEL-related homeobox 9-like
TrEMBLA0A445I6A60.0A0A445I6A6_GLYSO; WUSCHEL-related homeobox 8
TrEMBLI1M0480.0I1M048_SOYBN; Uncharacterized protein
STRINGGLYMA13G24150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-60homeobox-3