PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G169900.1.p
Common NameGLYMA_13G169900, LOC100797836
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32676.2 Da    PI: 4.458
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G169900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-2065119256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +k++++++eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Glyma.13G169900.1.p  65 KKKHRLSSEQVHLLEKNFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 119
                          78999*************************************************9 PP
2HD-ZIP_I/II132.61.5e-4265156192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rls+eqv+lLE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke+e+L++e
  Glyma.13G169900.1.p  65 KKKHRLSSEQVHLLEKNFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSE 154
                          59**************************************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Glyma.13G169900.1.p 155 VV 156
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-2049123IPR009057Homeodomain-like
PROSITE profilePS5007118.64161121IPR001356Homeobox domain
SMARTSM003896.0E-1963125IPR001356Homeobox domain
CDDcd000867.46E-1965122No hitNo description
PfamPF000461.9E-1765119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-2266128IPR009057Homeodomain-like
PRINTSPR000314.3E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000314.3E-6101117IPR000047Helix-turn-helix motif
PfamPF021831.8E-18121163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESGRIFFDA SASRGNNMLF LGNTELAFRG RSMMSMEEAS KRRPFFTSPD ELYDEEYYDK  60
QSPEKKKHRL SSEQVHLLEK NFEEENKLEP ERKTQLAKKL GLQPRQVAVW FQNRRARWKT  120
KQLERDYDVL KSSYDTLLSS YDSIMKENEK LKSEVVSLNE KLQVQAKEVP EETLCDKKVD  180
PLPVDEDMAP IFSTRVEDHL SSGSVGSAVV DEGSPQVVVD SVDSYFPADN YGGCMGPVER  240
VQSEQEDGSD DGRSYLDVFV ASETENQNHE EGEALGWWTN MYYVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.551730.0epicotyl| hypocotyl| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G169900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937280.0BT093728.1 Soybean clone JCVI-FLGm-24I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542698.10.0homeobox-leucine zipper protein HAT5 isoform X2
SwissprotQ022838e-96HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLI1M0210.0I1M021_SOYBN; Uncharacterized protein
STRINGGLYMA13G23890.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-77homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]