PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G152000.1.p
Common NameGLYMA_13G152000, LOC100778541
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 196aa    MW: 21800.3 Da    PI: 7.0456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G152000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-151767155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + ykGVr++  +g+Wv+e+r p  n+k++r++lg+f  +++Aa a++ a+++++g
  Glyma.13G152000.1.p 17 PVYKGVRQR--NGKWVCELRQP--NNKNARVWLGTFTHPDMAAIAYDVAALAFKG 67
                         68****975..6******9998..4478**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-101767IPR001471AP2/ERF domain
PROSITE profilePS5103219.231875IPR001471AP2/ERF domain
SMARTSM003801.6E-241881IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-171876IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-261876IPR001471AP2/ERF domain
CDDcd000184.33E-221977No hitNo description
PRINTSPR003671.6E-61930IPR001471AP2/ERF domain
PRINTSPR003671.6E-65777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQKRRAGRKK FHETRHPVYK GVRQRNGKWV CELRQPNNKN ARVWLGTFTH PDMAAIAYDV  60
AALAFKGDNA SLNFPHAATS LPRLNSRTCS VRAIQFAATQ AAEKHFSCAE SQQLQREGSL  120
EGSGSGSFSL DEDSSEFSSK EGGSERFFWD EEEVFNMPEL LNSMAEALII TPPALERGFN  180
WVGGETTVDL TLWSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G152000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594198.11e-145dehydration-responsive element-binding protein 1D
RefseqXP_028195859.11e-145dehydration-responsive element-binding protein 1D-like
TrEMBLA0A445HGL01e-144A0A445HGL0_GLYSO; Dehydration-responsive element-binding protein 1F
TrEMBLI1LZG31e-144I1LZG3_SOYBN; Uncharacterized protein
STRINGGLYMA13G21570.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-39C-repeat-binding factor 4