PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G151900.1.p | ||||||||
Common Name | GLYMA_13G151900, LOC100782443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 21649.3 Da PI: 4.7786 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g Glyma.13G151900.1.p 39 RYRGVRRRN-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 88 69****888.8*********94....468***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.09 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 39 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 39 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 39 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-33 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.02E-32 | 40 | 98 | No hit | No description |
PRINTS | PR00367 | 4.2E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MASLNCLPIP LSTQIFTHIG TMYSGNATSS SRGSSESGRY RGVRRRNSGK WVSEIREPKK 60 PNRIWLGTFP TPEMAAVAYD VAALALKGKD AGLNFPDSAS SLPVPASLSA RDIQVAAAAA 120 AAAAGAAKDS MRTQTGNYNI SEGQENPTGM GNQFVDEDLI FDMPNVLVNM AQGMLLSPPP 180 FDIGLEPNSP ENTEQETSLW NFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 35 | 96 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G151900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541448.2 | 1e-148 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 5e-48 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | K7LZW2 | 1e-147 | K7LZW2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G21560.2 | 1e-148 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G151900.1.p |
Entrez Gene | 100782443 |