PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G149500.1.p | ||||||||
Common Name | GLYMA_13G149500, LOC100778007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 25898.1 Da PI: 8.4147 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 56 | 110 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+ Glyma.13G149500.1.p 56 KKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 110 56779************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.3 | 8.8e-38 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L++ Glyma.13G149500.1.p 55 EKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKTM 144 69**************************************************************************************88 PP HD-ZIP_I/II 91 lke 93 l+e Glyma.13G149500.1.p 145 LRE 147 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.72E-19 | 44 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-19 | 54 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-16 | 56 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.53E-16 | 56 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 57 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.4E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.4E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-7 | 111 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEWNGSTRRY VPRADSSLSF LYNYNYTPYP GMEVKQQALA ETSSPMEKMN CGNQEKKKRL 60 TSDQLDSLEN SFQKEIKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKN KQLEHLYDSL 120 KQEFDVISKE KQKLEEEVMK LKTMLREQAS RTQQVSTGYT EISGEETVES TSEALRCSKR 180 GTLHHQQQQN NIGEGNCSFT LEDYNTVPVL PYWPGVPYYH P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 111 | RRARWKNKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G149500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098009 | 0.0 | BT098009.1 Soybean clone JCVI-FLGm-11N12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542577.1 | 1e-166 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
Refseq | XP_028195752.1 | 1e-166 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-51 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A445HGH1 | 1e-165 | A0A445HGH1_GLYSO; Putative homeobox-leucine zipper protein ATHB-51 isoform A | ||||
TrEMBL | I1LZD7 | 1e-165 | I1LZD7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G21330.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-54 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G149500.1.p |
Entrez Gene | 100778007 |
Publications ? help Back to Top | |||
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