PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G145800.1.p | ||||||||
Common Name | GLYMA_13G145800, LOC100814530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26874.7 Da PI: 5.0741 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l v++lG ++W++ a+ g++R++k+c++rw +yl Glyma.13G145800.1.p 8 KGTWLQEEDEQLTSFVARLGERRWDSLAKVAGLKRSGKSCRLRWMNYL 55 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 62 | 106 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE++l+v++ ++lG++ W++Iar+++ gRt++++k++w ++l Glyma.13G145800.1.p 62 GHFSVEEEQLIVQLQQELGNK-WAKIARKLP-GRTDNEIKNYWKTHL 106 6799*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.949 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-27 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.836 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-25 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.55E-11 | 64 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MQGENLRKGT WLQEEDEQLT SFVARLGERR WDSLAKVAGL KRSGKSCRLR WMNYLRPNLK 60 HGHFSVEEEQ LIVQLQQELG NKWAKIARKL PGRTDNEIKN YWKTHLRKRA QAQQGDFKYK 120 LEIATQEVNQ KSIDMDSKNC KHGNVWCQDS EWETKDSSST DTLSLSDWEL RSSPYETRIL 180 DWIAELQNGY GENELEQDCN STGTCNYYPQ EFDEGCDSWD YSGSLWDMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-25 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-25 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G145800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541429.1 | 1e-170 | transcription factor MYB27 | ||||
TrEMBL | A0A445HG15 | 1e-169 | A0A445HG15_GLYSO; Transcription factor MYB27 | ||||
TrEMBL | K7LZS8 | 1e-169 | K7LZS8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G20880.2 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 7e-51 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G145800.1.p |
Entrez Gene | 100814530 |