PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G144600.7.p
Common NameGLYMA_13G144600, LOC100810255
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 465aa    MW: 52593.2 Da    PI: 7.5668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G144600.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07339386448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E ++lv+++ ++G g+W+ I r +      Rt+ +++++w+++l
  Glyma.13G144600.7.p 339 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsssSYRTPIDLRDKWRNLL 386
                          9***************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-11330393IPR009057Homeodomain-like
PROSITE profilePS5129413.177330390IPR017930Myb domain
SMARTSM007172.9E-8335388IPR001005SANT/Myb domain
CDDcd116601.71E-16337387No hitNo description
SuperFamilySSF466891.57E-15338405IPR009057Homeodomain-like
PfamPF139215.1E-5339397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDREEYLRKC SNMKCQRVQV DESFVPALQD EVMEVEHLLA EPRNVHASLD GSLDSHTTLN  60
DKDDLELEVL DGLLDDVEID DLEGTGGFAG ACEEYFLDFG FADKFEEVLG SGPFEGSLLQ  120
ISSSESHSSG LSGSSIVGGV LESTKVPIAK SECKNDSLDE TITYEAHGAF RNNPSQPSKV  180
NCRYNISLDI QHLQELENNS HLAAGILTCK KGKGPVEKGQ PAVLREKRFR KPTQRYIEEF  240
SNSRSKEKAP TAVTKTEHLS DSSCDVLHIR IKALKKSPSE KSSNENSDVM LPELQVRKRR  300
LEKEKLEYDK ELFPSESEDE CSTSKRSRRK DRRKHQKMWT LPEVLKLVEG ISEYGVGRWT  360
DIKRFLFSSS SYRTPIDLRD KWRNLLRASS AQKTSREAEQ NDELALRPLP FNVVHRVREL  420
AKIHPYPRQR GSKRLRVSQA GSSIIAKDSP PLSLSKRNVR RKFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332KRSRRKDRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.361440.0cotyledon| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G144600.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982540.0BT098254.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594157.10.0uncharacterized protein LOC100810255 isoform X1
TrEMBLA0A0R0GYD90.0A0A0R0GYD9_SOYBN; Uncharacterized protein
TrEMBLA0A445HG500.0A0A445HG50_GLYSO; Uncharacterized protein
TrEMBLK7LZR80.0K7LZR8_SOYBN; Uncharacterized protein
STRINGGLYMA13G20760.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-24TRF-like 6