PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G140600.1.p | ||||||||
Common Name | GLYMA_13G140600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 515aa MW: 57052.2 Da PI: 8.8995 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF Glyma.13G140600.1.p 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL 204 89****************************997656666..69999******************************************** PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++ l+v+++r+ Glyma.13G140600.1.p 205 --RAENGDLCVGIRRA 218 ..4488999****997 PP | |||||||
2 | Auxin_resp | 111 | 1.2e-36 | 286 | 369 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++k++FevvY+Prast+eF+vk++ ve+a+++++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ Glyma.13G140600.1.p 286 AANLAANKKPFEVVYYPRASTPEFCVKASLVEAAMQTRWYSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 369 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-29 | 109 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-37 | 110 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-21 | 116 | 217 | No hit | No description |
PROSITE profile | PS50863 | 13.014 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 117 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-21 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-32 | 286 | 369 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MITFMDTKEK LKEVERCLDP QLWHACAGGM VQMPTVNTKV YYFPQGHAEH ACGPVNFKTC 60 PKVPPFVPCR VVAVKYMADP ETDEVYAKLK LVPLNANDVD YDHDVIGAET RDKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGLETSS GWNPAGGNFP 240 MPYSGFSPFL REDDNRILRN GNSNGLNPSV SMMGKGKVRP EAIIEAANLA ANKKPFEVVY 300 YPRASTPEFC VKASLVEAAM QTRWYSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW 360 PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHF SPFSPPRKKL RLPQHPDFPL 420 DGQIPLPTLP NNLLGPNNTN QFGCLLESTP AGMQGARHAH YGLSLSDLHL SKLQSGLSSA 480 GFPPLDHAAT PMKVSNNRHC KSLASVRTSL AYYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-78 | 18 | 390 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.51669 | 0.0 | flower| hypocotyl |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G140600.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028198002.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_028198003.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | K7LZP0 | 0.0 | K7LZP0_SOYBN; Auxin response factor | ||||
STRING | GLYMA13G20382.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G140600.1.p |
Publications ? help Back to Top | |||
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