PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G136300.2.p | ||||||||
Common Name | GLYMA_13G136300, LOC100797466 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32383.6 Da PI: 8.6405 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 35 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Glyma.13G136300.2.p 35 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 79 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-17 | 29 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 30 | 84 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 33 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-19 | 33 | 82 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-11 | 34 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-12 | 35 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-9 | 37 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MNSSTNTSNS QSMAAAASDG SGKKVRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI 60 EDFVGSKTVI QIRSHAQKYF LKVQKNGTVA HVPPPRPKRK AAHPYPQKAS KNVLVPLPAS 120 VGYASSRNTL APGFASWDET SLLMNAGADK PMTCQDELNN VHHGNEADIG SKGITQITNS 180 SLSGVGNSTR TLLTSEIPKQ GKQAPVLHGL PDFAEVYGFI GSVFDPETND HVQKLKEMDP 240 INFETVLLLM RNLTVNLSSP DFEPIKKVLS TYDVNPMAVG IDVKKQTNDL SCQTA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12983 | 0.0 | cotyledon| pod |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G136300.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541400.1 | 0.0 | protein REVEILLE 8 isoform X2 | ||||
Swissprot | Q8RWU3 | 1e-136 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | I1LZ00 | 0.0 | I1LZ00_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G19910.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-122 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G136300.2.p |
Entrez Gene | 100797466 |
Publications ? help Back to Top | |||
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