PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G133100.1.p
Common NameGLYMA_13G133100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 183aa    MW: 20441.8 Da    PI: 10.2982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G133100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144668123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Glyma.13G133100.1.p 46 FECKTCNRKFPSFQALGGHRASH 68
                         89**********99999998887 PP
2zf-C2H214.40.0001195117123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ Fs    L  H+r+H
  Glyma.13G133100.1.p  95 HECSICGMEFSLGQALGGHMRKH 117
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.1E-124670IPR007087Zinc finger, C2H2
SMARTSM003550.154668IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.06E-846117No hitNo description
PROSITE profilePS501579.8894673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-493119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.55495122IPR007087Zinc finger, C2H2
PfamPF139124.5E-995119IPR007087Zinc finger, C2H2
SMARTSM003550.05795117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVAILKRQRE TEAEESIIRL AESLMQLSRV QQKSKPLLKT FSPTEFECKT CNRKFPSFQA  60
LGGHRASHKK PKFEGEELKE EAKKGLSLGN KPKMHECSIC GMEFSLGQAL GGHMRKHRGA  120
TSENNNEAFS SSIKQAISKV PVLKRSNSKR VMCLEMDLNL TPLENDLKLL FGNKAPRVDL  180
SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G133100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0916770.0BT091677.1 Soybean clone JCVI-FLGm-8F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235351.21e-130C2H2-type zinc finger protein
RefseqXP_028196476.11e-130zinc finger protein ZAT11-like
TrEMBLA0A0B2SVX01e-129A0A0B2SVX0_GLYSO; Zinc finger protein ZAT11
TrEMBLI1LYW21e-129I1LYW2_SOYBN; Uncharacterized protein
STRINGGLYMA13G19570.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-37C2H2 family protein