PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G126200.1.p | ||||||||
Common Name | LOC100793593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 480aa MW: 53023.9 Da PI: 5.5746 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.2 | 4.2e-34 | 259 | 313 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ Glyma.13G126200.1.p 259 KSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRT 313 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.213 | 256 | 316 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.55E-18 | 257 | 313 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-32 | 258 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-25 | 259 | 313 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-10 | 261 | 312 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.7E-26 | 344 | 390 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MEAHPTFSIE RSKQLNNMGM SGALSSSLSI LPIPPEEMFP KLPQSQLDFV EQELMTRPFT 60 HSSYLNSGGV VGHIFSSSPG YSTDLHHSSL SPDEKHSTNA HLISQSSTNI TQFPLSYSSN 120 TGPPTSATPS HYSKESSVSW HTDSLPSFLD FPENGSIDNN RVESSACPIM ASEEYSKQND 180 WQEWAERLIS DDDTLTTNWN DLLADNIQDL EPKVPFQVSK PLSQIPGHQS QGHQQLPASY 240 GENCIGAALS SSANFAPAKS RMRWTPELHE AFVEAVNQLG GSEKATPKGV LKLMKVEGLT 300 IYHVKSHLQK YRTARYRPES SEGVMEKKTS SVEEMASLDL RTGIEITEAL RLQMEVQKRL 360 HEQLEIQRNL QLRIEEQGRY LQMMFEKQCK PGNETFKAPS SIIETPSGGS SNATKDSLAK 420 NEMEASQVNH GRSGPDQVKG STTFEEGSLE KCGKPDSPKT EHAIASEDSA QAPKRQRTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-31 | 258 | 317 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9578 | 0.0 | cotyledon| leaf| root| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G126200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Only moderately up-regulated by Pi starvation. {ECO:0000269|PubMed:11511543}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542436.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_006594044.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
Refseq | XP_006594046.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_006594047.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_006594048.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_014620966.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
Refseq | XP_014620967.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
Refseq | XP_014620969.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_014620970.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_025980786.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_028196505.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_028196506.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_028196507.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_028196508.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_028196510.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_028196511.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_028196513.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3 | ||||
Refseq | XP_028196514.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3 | ||||
Refseq | XP_028196515.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3 | ||||
Refseq | XP_028196516.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3 | ||||
Swissprot | Q94CL7 | 3e-97 | PHR1_ARATH; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A0B2SXD8 | 0.0 | A0A0B2SXD8_GLYSO; Myb family transcription factor APL | ||||
TrEMBL | A0A445HF58 | 0.0 | A0A445HF58_GLYSO; Protein PHOSPHATE STARVATION RESPONSE 1 isoform A | ||||
TrEMBL | K7LZC8 | 0.0 | K7LZC8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G18805.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-88 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G126200.1.p |
Entrez Gene | 100793593 |