PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G120900.1.p
Common NameGLYMA_13G120900, LOC102662947
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 212aa    MW: 23665.5 Da    PI: 6.7097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G120900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000223557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C++ F++   L  H+++H
  Glyma.13G120900.1.p 35 YACSFCKREFRSAQALGGHMNVH 57
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-63261No hitNo description
Gene3DG3DSA:3.30.160.608.2E-43360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00923557IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-63558IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1983562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGNYLNRNS TTPQREDSFG FEEHSWGTPW PARNYACSFC KREFRSAQAL GGHMNVHRRD  60
RARLRSSLSS WVSECPKPNP NNNPTLLPPP SSSSPSPLPD EPLNYAHPSP LCSPCLTLSS  120
SPSPASTSGD KKPRLTPSHQ FPLLIPQSEI KMMSMNTRSD FIADEEMKGC VVEEEEHKGF  180
KNNEQNITLE LGIGVLKHQE EKLDLELRLG H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113057229superman protein
2l1o_A2e-113057229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G120900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-174AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594012.11e-155transcriptional regulator SUPERMAN
RefseqXP_006594013.11e-155transcriptional regulator SUPERMAN
TrEMBLI1LYH51e-154I1LYH5_SOYBN; Uncharacterized protein
STRINGGLYMA13G18150.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.16e-14zinc finger protein 11