PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G120700.1.p | ||||||||
Common Name | GLYMA_13G120700, LOC100782107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 55276.5 Da PI: 5.5408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 357 | 403 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq Glyma.13G120700.1.p 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 403 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.4E-45 | 51 | 227 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.259 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-17 | 356 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-13 | 356 | 407 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 357 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 357 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.80E-4 | 437 | 504 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MMGEKFCVNE EDKGVLESVL GAEAVAFFIS ALSNNVFSGV VAPSASTDPG LRQRLCQLVE 60 GSKWNYAVFW QVAVLKSGGS ALVWGDGHCS DPKGERNGVG KEDEQEVRKN VLQKLDACFG 120 GSVSKEANYA RLDRVSDLLM FYLSSMCYIF GFDSPCGPGS SFKSGKLIWA SDAAGCLNQL 180 ESRSFMGKLA GLQTVVFVPL KSGVVELGSL EMVPEEHGVV EMVRTAFGES SPGQAKVFPK 240 IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSYEVQAL GVNHAYGNSS NGTLGVSNEG 300 KMFPQLNQMM AGNFNAQGSG VPCLDLGNED SSSIHADERK PRKRGRKPAN GREEPLNHVE 360 AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITFIT DLQMKIKVLE AEKNMIHNQD 420 QKLSLPDMDF QEREDETVVT VRCPLDIHPV SNVVKTFKEH QIVAQDSSVS TTDDKIIHTF 480 SIRTEGGETA AIQLKEKLEA SLSKNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_B | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_E | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_F | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_G | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_I | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_M | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_N | 9e-30 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 346 | RKPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61039 | 0.0 | flower| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G120700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015680 | 0.0 | AP015680.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0636, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594010.1 | 0.0 | transcription factor bHLH3 | ||||
Refseq | XP_028197614.1 | 0.0 | transcription factor bHLH3-like | ||||
Swissprot | A0A3Q7H216 | 1e-178 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A445HEL7 | 0.0 | A0A445HEL7_GLYSO; Transcription factor bHLH3 | ||||
TrEMBL | K7LZ93 | 0.0 | K7LZ93_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G18131.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8263 | 34 | 45 | Representative plant | OGRP9430 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-157 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G120700.1.p |
Entrez Gene | 100782107 |
Publications ? help Back to Top | |||
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