PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G117600.1.p
Common NameGLYMA_13G117600, LOC100797109
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 384aa    MW: 42124.6 Da    PI: 7.6707
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28181239259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK  kg+++pr+YYrC +   Cpv+k+v+r+aed++vv++tYeg+Hnh+
  Glyma.13G117600.1.p 181 GDGCQWRKYGQKISKGNPCPRAYYRCNMGtACPVRKQVQRCAEDESVVITTYEGNHNHS 239
                          69**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-31165241IPR003657WRKY domain
SuperFamilySSF1182901.7E-26173241IPR003657WRKY domain
PROSITE profilePS5081129.011175241IPR003657WRKY domain
SMARTSM007741.6E-32180240IPR003657WRKY domain
PfamPF031069.5E-25182238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGKIALKKL LEVQEKAYVN DTDAINWTEE PSIKNTLGSS LLSLSLNNLE PPQNHEQQNL  60
NQLGLLQIEL EEVKKENQNL RSMLNEISEH YAALQNQLLL AMQQKKLSSS PRNNEDMQKD  120
SQQNNMEKPA LPSCRQFLNT GKINNRVILQ EAKIVEEQAF EASCKKARVS VRARSESSLM  180
GDGCQWRKYG QKISKGNPCP RAYYRCNMGT ACPVRKQVQR CAEDESVVIT TYEGNHNHSL  240
PPAARSMACT TSAALKMFLS GSTTSSHGST YSYSNSDLFS PLCTSTYYPS AAPSCPTITL  300
DLTQTSKNNM KFPSAISSNH LQPFPLSLHG QPQQSEGILP SEKNLALVDV VSAAITNDPS  360
LKAALEAAVS SIIGDSQKSL PTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-22171241877Probable WRKY transcription factor 4
2lex_A3e-22171241877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217400.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-41AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593988.10.0probable WRKY transcription factor 47
RefseqXP_028195951.10.0probable WRKY transcription factor 47
TrEMBLA0A445HEQ50.0A0A445HEQ5_GLYSO; WRKY transcription factor 42 isoform A
TrEMBLI1LYE30.0I1LYE3_SOYBN; Uncharacterized protein
STRINGGLYMA13G17800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.19e-48WRKY family protein