PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G112400.1.p | ||||||||
Common Name | GLYMA_13G112400, LOC100804384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 21987.4 Da PI: 4.893 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.8e-19 | 19 | 67 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+Wv+eIr p++ r+r++lg+f+t+e+Aa+a +aa+ +l+g Glyma.13G112400.1.p 19 YKGVRKRK-WGKWVSEIRLPNS---RQRIWLGSFDTPEKAARAFDAAMFCLRG 67 9****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-21 | 18 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-33 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 18 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 18 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-12 | 19 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-31 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 5.7E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MMVKPSSEKP EEHRDSKYYK GVRKRKWGKW VSEIRLPNSR QRIWLGSFDT PEKAARAFDA 60 AMFCLRGRNA KFNFPDNPPD IAGGESMTPS QIQVAAAQFA NAGPHEGHSG RPEHSPMQSL 120 SPSVSEGTVL TDSDVTTLNG SLTDLFTPVG SSGYASDYGI FPGVDDFSGG FYVPEMLNFN 180 YGEENGEGFI VDESFLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 19 | 75 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 25 | KGVRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.41628 | 0.0 | flower| leaf| meristem| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G112400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ208969 | 0.0 | DQ208969.1 Glycine max dehydration-responsive element binding protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542371.3 | 1e-147 | ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 5e-55 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | I1LY83 | 1e-146 | I1LY83_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G17250.1 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-57 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G112400.1.p |
Entrez Gene | 100804384 |
Publications ? help Back to Top | |||
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