PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G109500.2.p | ||||||||
Common Name | GLYMA_13G109500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRF | ||||||||
Protein Properties | Length: 383aa MW: 43197.6 Da PI: 8.2513 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.8 | 1.1e-24 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Glyma.13G109500.2.p 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP | |||||||
2 | QLQ | 56.7 | 7e-20 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+ Glyma.13G109500.2.p 12 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 46 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-11 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.1E-15 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.36 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-20 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MNGRNVNTNR FPFTPSQWQE LEHQALIYKY MASGISIPPD LLFTIKRTTH LDSSRLLPHH 60 PQHFGWNYLP MGLGRKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSRKPV 120 EVLKTTPTTA AVATNTDAST PTTILSITKN SPAHALSPTT HSLSHDTYHH HHHHPHPQQH 180 SSHSFLYHHS SRPSSGAALS FQDNSAPLFL DTASCSQNNN NTDCRYVYGL KEEVDEHAFF 240 TEPSGTMRSF SASSMEDSWQ LTPLTISSSS SSKQRNCSGL SNDNNEYSYL QLQSLNGNNS 300 KQPQQDQGCY ISGSDVKCET FMKLGKEEPQ KTVHRFFDEW PPKSRGSWLD LDDKSSTTQL 360 SISIPTSTHD FATFNSTTQR DG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39122 | 0.0 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G109500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-179 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014620921.1 | 0.0 | growth-regulating factor 1 isoform X3 | ||||
TrEMBL | K7LZ01 | 0.0 | K7LZ01_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G16924.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-52 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G109500.2.p |