PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G109500.1.p
Common NameGLYMA_13G109500, LOC100783524
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 385aa    MW: 43467.9 Da    PI: 8.4085
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G109500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-2478121144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Glyma.13G109500.1.p  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 121
                          79***************************************987 PP
2QLQ56.77.1e-201246236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Glyma.13G109500.1.p 12 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 46
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-151245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.361247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9878122IPR014977WRC domain
PfamPF088791.4E-2079121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MNGRNVNTNR FPFTPSQWQE LEHQALIYKY MASGISIPPD LLFTIKRTTH LDSSRLLPHH  60
PQHFGWNYLP MGLGRKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSRKPV  120
EVLKTTPTTA AVATNTDAST PTTILSITKN SPAHALSPTT HSLSHDTYHH HHHHPHPQQH  180
SSHSFLYHHS SRPSSGAALS FQDNSAPLFL DTASCSQNNN NTDCRNRYVY GLKEEVDEHA  240
FFTEPSGTMR SFSASSMEDS WQLTPLTISS SSSSKQRNCS GLSNDNNEYS YLQLQSLNGN  300
NSKQPQQDQG CYISGSDVKC ETFMKLGKEE PQKTVHRFFD EWPPKSRGSW LDLDDKSSTT  360
QLSISIPTST HDFATFNSTT QRDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.391220.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G109500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593944.10.0growth-regulating factor 1 isoform X2
TrEMBLK7LZ000.0K7LZ00_SOYBN; Uncharacterized protein
STRINGGLYMA13G16924.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-52growth-regulating factor 5