PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G107900.1.p
Common NameGLYMA_13G107900, LOC100792905
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 234aa    MW: 25323.7 Da    PI: 10.4502
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G107900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.3e-3273129158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p+YVNaKQy++Il+RRq+Rakl++++kl +ksrkpylheSRh+hAl+R Rg+gGrF
  Glyma.13G107900.1.p  73 DGPIYVNAKQYHGILRRRQSRAKLKAQNKL-IKSRKPYLHESRHRHALKRVRGTGGRF 129
                          57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-3571132IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.10272132IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-2775129IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-247597IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-24106129IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKPFLLSHPD TMYNCSQVYC SHSLAHTSYP CGDPYFGSSI VAYGTQAITQ QMVPQMLGLA  60
STRIALPVEL AEDGPIYVNA KQYHGILRRR QSRAKLKAQN KLIKSRKPYL HESRHRHALK  120
RVRGTGGRFL SAKQLQQFNA ELVTDAHSGP GPVNVYQKKD ASEAESHPSR TGKNASITFT  180
AISGLTSMSG NSVSFRRPEH NFLGNSPNIG GSSQCSGGLT FGGGARQCTS VGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2273134263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113122RHRHALKRVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.518710.0leaf| somatic embryo
Function -- GeneRIF ? help Back to Top
  1. The GmNFYA3 gene functions in positive modulation of drought stress tolerance and miR169 directs GmNFYA3 mRNA cleavage.[GmNFYA3]
    [PMID: 23483290]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G107900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965760.0BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349755.11e-174nuclear transcription factor Y subunit A-12 isoform 1
RefseqXP_003542352.11e-174nuclear transcription factor Y subunit A-12 isoform X1
RefseqXP_014620912.11e-174nuclear transcription factor Y subunit A-12 isoform X1
RefseqXP_014620913.11e-174nuclear transcription factor Y subunit A-12 isoform X1
RefseqXP_028198257.11e-174nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_028198258.11e-174nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_028198259.11e-174nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A0B2PK061e-173A0A0B2PK06_GLYSO; Nuclear transcription factor Y subunit A-3
TrEMBLI1LY311e-173I1LY31_SOYBN; Uncharacterized protein
STRINGGLYMA13G16770.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-41nuclear factor Y, subunit A3