PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G105400.1.p | ||||||||
Common Name | GLYMA_13G105400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 511aa MW: 57498.2 Da PI: 7.1268 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.6e-11 | 314 | 360 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h + ErrRR+++N++f+ Lr llP+ +K K +iL+ A + ++sL Glyma.13G105400.1.p 314 QHHMITERRRREKLNESFQALRALLPPG-----TKKAKGTILTTAKDTMRSL 360 67999*********************97.....7999999999999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.738 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 311 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-14 | 312 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.89E-10 | 313 | 365 | No hit | No description |
Pfam | PF00010 | 1.4E-8 | 314 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDGVFTLPKA ARADFFRSLV QSFGCTYVCL WQYDSNLSNL FFFDGYCDVT NNQPSSYLGS 60 VAERLFHQYR ALTFDVNHEC VPGVAFRNQL PYIELQLLDL LRLTSTEIQT QFFQIAVFMG 120 CKNGEIELGF SNISQVIKKT ILPSSSFCFM SLSTGSPDQC SSSLLLSSIP GTSQSHFPQT 180 LPTQTHQQQS IQEIDLAPVI PSYFPTPDGE HEAIVRALMS VMSPLSSSSS TSQQHQPRQI 240 LPNYTSIVHP GATAFNTYRS DTMNPNITPY MGSNFRRQSP QNRSFAFFTN LNLMRMRELV 300 SQPASRPIST QHQQHHMITE RRRREKLNES FQALRALLPP GTKKAKGTIL TTAKDTMRSL 360 MDEIEKINLR NQQLMAVLSA KETTVSATST EENKAKPSSS SSNERLNVLV SAVLESSSLS 420 EERMVDVQVT LRGESSRVDV LIRLLEFLER VQNVNLVSMY ANNHIIGGTT INQLTFRLRI 480 IEGNEWDEHA LEEAVRRVVA DTIQWKPLDQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 319 | 324 | ERRRRE |
2 | 320 | 325 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G105400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595336.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | K7LYW3 | 0.0 | K7LYW3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G16480.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 | Representative plant | OGRP8581 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 5e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G105400.1.p |