PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G103900.1.p | ||||||||
Common Name | GLYMA_13G103900, LOC100810090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 315aa MW: 35304.9 Da PI: 9.7532 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.8 | 1.7e-19 | 178 | 211 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + Glyma.13G103900.1.p 178 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 211 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.8E-13 | 171 | 212 | No hit | No description |
SMART | SM00401 | 7.3E-21 | 172 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.558 | 172 | 208 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.9E-16 | 176 | 211 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.76E-15 | 177 | 209 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.1E-17 | 178 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MIPAYRHSVS SVMPLDLNED QNHEFFSPIH HPSSSFSSLS SSYPILFNPP NQDQEARSYD 60 WETTKHLPSH EEEAEKIIPT SGSWGHSVEE SEHKVTVWRK EERNENLAED GSVKWMPSKM 120 RIMRKMLVSN QTDAYTSDNN TTHKFDDHKQ QLSSPLGIDD NSSNNYSDKS NNSIVRVCSD 180 CHTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAMAAAAAA ALGDGAVIVE AEKSVKGKKL 240 QKKKEKKTRI EGAAQMKMKR KLGVGAKASQ SRNKFGFEDL TLRLRKNLAM HQVFPQDEKE 300 AAILLMALSY GLVH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G103900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543725.1 | 0.0 | GATA transcription factor 21 | ||||
TrEMBL | I1LVJ1 | 0.0 | I1LVJ1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G00200.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 7e-34 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G103900.1.p |
Entrez Gene | 100810090 |