PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G100500.3.p
Common NameGLYMA_13G100500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 616aa    MW: 69791.9 Da    PI: 9.9432
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G100500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.56.9e-11486530953
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          ++ +e+L ++F++n  p ++ re L+k+lgL++++V+ WF+N R+
  Glyma.13G100500.3.p 486 RDAVERLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARY 530
                          67899**************************************97 PP
2PHD35.13e-12225279251
                          BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          C  C+   +  +++++lC+ +C+++fH+kCl+++l++e++  g   w+C+ C++k
  Glyma.13G100500.3.p 225 CVKCKVheELPDNDIILCNgKCERAFHQKCLDPPLDTENISPGeqGWFCKFCECK 279
                          88888843445*******956******************999899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.05E-14215282IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-11219279IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.46222279IPR019787Zinc finger, PHD-finger
CDDcd155048.21E-26224276No hitNo description
SMARTSM002499.5E-8224277IPR001965Zinc finger, PHD-type
PROSITE patternPS013590225276IPR019786Zinc finger, PHD-type, conserved site
PfamPF006281.7E-9225279IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:1.10.10.603.4E-11468529IPR009057Homeodomain-like
SuperFamilySSF466894.28E-10471534IPR009057Homeodomain-like
PROSITE profilePS5007111.418475535IPR001356Homeobox domain
CDDcd000864.82E-8476539No hitNo description
SMARTSM003892.9E-8477539IPR001356Homeobox domain
PfamPF000461.8E-8486530IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MRDSEKKLNN KGSKKSSPLK VRKKGQGKKE KVKVGSKSHT KNAGTDISRK RVISSLKVKG  60
PRKDSSDKKL ITGKKLPMKN KKSSQKSSSK LQGKKASLSS RKEGGDADGA VKLQKMKRKR  120
KKKRPRNNVD LDDPSRLQRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK IRPEKELQRA  180
RKQILKCRLG IRDAIRQLDS LGSLSSIEDS AIALDGSVCH EHILCVKCKV HEELPDNDII  240
LCNGKCERAF HQKCLDPPLD TENISPGEQG WFCKFCECKM EILEATNAHL GTHFSLHSTW  300
QDVFKEEAAI PDGEIALLNP EQEWPSDDSE DDDYDPERKE DSHNINIEGT NDSASEDLSS  360
STSLCSSDGE CSPIDGVSHE YFSVNSSIDS DESEDKACGR RQRKAVDYKK LYDEMFGKDA  420
PAYELLSEDE DWGPGKRKRR EKESDAVDSL MTLHESENRH PNNEHNMTSK DSSSIKIKRH  480
CFRIPRDAVE RLRQVFAENE LPPRSIREGL SKELGLDTEK VSKWFKNARY LALKNRKHQA  540
EGVADQLQSI TSTKNRLQKQ ENVDPLKSKT PKITRTHSQK DVKNVNGRKK MKSSNKKRQP  600
EIPPPPGENG KKVLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115122MKRKRKKK
2117121RKRKK
3117123RKRKKKR
4436441RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G100500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-172AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543734.10.0pathogenesis-related homeodomain protein
RefseqXP_006593511.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-149PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLK7LWS90.0K7LWS9_SOYBN; Uncharacterized protein
STRINGGLYMA13G00540.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-148pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]