PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G088100.1.p | ||||||||
Common Name | GLYMA_13G088100, LOC100802961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 34052.2 Da PI: 6.3679 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Glyma.13G088100.1.p 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 186 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.92E-34 | 136 | 196 | No hit | No description |
SMART | SM00380 | 2.8E-38 | 137 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 137 | 194 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 137 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.182 | 137 | 194 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-14 | 138 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAATMNFYNE TSQQVQSDPF RGELMEVLEP FMKTCPSSTP SILSSDSPSP SSYSPLLPPH 60 PSFSTYTPSA YLFQNQQPLI GFEQQPSSLL GLNHLSTSQI SQIQAQAQAQ NSLSLNFLGP 120 KPVPMKHVGG PAKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA 180 AYRLRGDLAR LNFPNLKGSC PGEEYKPMQA AVDAKLDAIC ANLAEMQKQG KNEKGARSGK 240 KSKQGPNLEA KPEPEASGSG AAALSPESEG SADSSALSDL TFDVTEPQWE DASAHFNLQK 300 FPSYEIDWDS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 136 | 194 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59056 | 0.0 | cotyledon| leaf| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G088100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 7e-38 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542454.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Refseq | XP_028197329.1 | 0.0 | ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 3e-83 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A445HD86 | 0.0 | A0A445HD86_GLYSO; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | I1LVZ7 | 0.0 | I1LVZ7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G01930.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-60 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G088100.1.p |
Entrez Gene | 100802961 |
Publications ? help Back to Top | |||
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