PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G086400.1.p
Common NameGLYMA_13G086400, LOC100800846
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 335aa    MW: 38127.8 Da    PI: 5.9593
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G086400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien +nrqvtfskRrng++KKA+ELS+LCd+++avi+fs++g++  +s
  Glyma.13G086400.1.p  9 KRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFS 58
                         79********************************************9997 PP
2K-box22.35.4e-091231901178
                K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                          +++ e+lqqe++kL++++++ ++++R +  + L+  ++ +L++ e+ L + l+++ ++K+ ll ++++
  Glyma.13G086400.1.p 123 NSEIEELQQEVNKLQQQLQMTEEQIRLYEPDPLKMSTMADLENSEKYLVDVLTRVIQRKEYLLSNHLS 190
                          57899**********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.408161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28276IPR002100Transcription factor, MADS-box
CDDcd002651.68E-35275No hitNo description
PRINTSPR004043.1E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-5125191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRVKLEIKR IENPTNRQVT FSKRRNGLIK KAYELSILCD IDIAVIMFSP SGRVNHFSGR  60
RRIEDVFTRY INLPDQVRDN AVSFPELPYR RGIQNKEYLL RTLQQLRSEN DIALQLANPG  120
DINSEIEELQ QEVNKLQQQL QMTEEQIRLY EPDPLKMSTM ADLENSEKYL VDVLTRVIQR  180
KEYLLSNHLS SYDPSGIQGI PTSFENVGWL QDGNQNHTQI FDASAPLDPL RDLSSTVYGS  240
FSQGTSSNAN PRIMGECHVS NPSDGNLQAW PLGYTLYPHH HIQHGMVGPD MTDMMPNGQV  300
NIPITPSHVE QPKNESVEYD QSKQPPPHHQ LNAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-16190191MEF2 CHIMERA
6bz1_B6e-16190191MEF2 CHIMERA
6bz1_C6e-16190191MEF2 CHIMERA
6bz1_D6e-16190191MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G086400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897450.0BT089745.1 Soybean clone JCVI-FLGm-14M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543775.20.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-116AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLI1LW120.0I1LW12_SOYBN; Uncharacterized protein
STRINGGLYMA13G02170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-108AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]