PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G081600.1.p | ||||||||
Common Name | GLYMA_13G081600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28678.8 Da PI: 5.0421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.8e-18 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Glyma.13G081600.1.p 41 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 91 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-18 | 42 | 101 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-29 | 42 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-33 | 42 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-11 | 42 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.931 | 42 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.67E-17 | 43 | 102 | No hit | No description |
PRINTS | PR00367 | 6.7E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVKSENKIQR EQPSSSKLMR PLSSSSSSSS SSSDNNNKNK KKYKGVRMRS WGSWVSEIRA 60 PNQKTRIWLG SYSTAEAAAR AYDAALLCLK GSSATNLNFP SSSSSLQHYI IPQDTSMMSP 120 KSIQRVAAAA ANNFLDNNAI AINNNVTTPP SPISPHSPPL ASTPSSSSFV SSPSMSSSSP 180 SDQIDDDVSL LTPFGAYTTA VATTTICDQE NESMAMMESW YGLEGLQSPK YVDQMLSGAF 240 FDIDSTQLLD DLYEESDIRL WSFC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56874 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G081600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ228455 | 0.0 | FJ228455.1 Glycine max AP2 domain-containing transcription factor 3 (AP2-3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241199.1 | 1e-179 | AP2 domain-containing transcription factor 3 | ||||
TrEMBL | K7LX44 | 0.0 | K7LX44_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G02860.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 9e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G081600.1.p |