PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G073400.1.p | ||||||||
Common Name | GLYMA_13G073400, LOC100800658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 535aa MW: 59014.6 Da PI: 5.2155 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.7e-18 | 50 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l Glyma.13G073400.1.p 50 KGPWTAAEDAILVEYVKKHGQGNWNAVQKHSGLARCGKSCRLRWANHL 97 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 103 | 146 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ Glyma.13G073400.1.p 103 KGAFTAEEENRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 146 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.082 | 45 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-30 | 48 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 49 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 50 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 51 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-12 | 52 | 97 | No hit | No description |
PROSITE profile | PS51294 | 24.709 | 98 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-16 | 102 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 103 | 146 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 105 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-11 | 105 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MNLQSCILTA MSSMTSGGDT RKISKGRWSS SLDEKVGVGG NVGGEGPLKK GPWTAAEDAI 60 LVEYVKKHGQ GNWNAVQKHS GLARCGKSCR LRWANHLRPD LKKGAFTAEE ENRILELHAK 120 MGNKWARMAA ELPGRTDNEI KNYWNTRIKR MQRAGLPIYP EELCQRILNG NQESQNVGTM 180 TNEACHHDDL SQTNNFDIPD VEFKNFKFRH GLPHVPSIFD MPESSLFDQS SDSSHSYNFL 240 FPTMRPTKRP RESEMLYDSF GSCSINAAPL FDQYGNYTFE KISDHPGLSL PCDPVLNTTD 300 QFHGDNLTGS HAALNGNASA SVPIFGAMKL ELPSLQYPET QHGSWGPPMS PLPSLESVDT 360 LIQSPTLEPI LSDPISPQSS GLLEAIVYNS KSLKGSNNDL LLQETIATAN EVANISTLNH 420 SFQTEWDELG DPNSPLGQSA ASVLTDYTPV RMCSVDGYQS TETSQDHDDK HEAPTTQFPD 480 SSSKKKILKQ VDYTQPDALL DLGWFGNNTK YESDQFVQQD ALGALFGDNC QHQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 48 | 150 | 5 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30266 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G073400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543825.2 | 0.0 | transcription factor GAMYB isoform X1 | ||||
TrEMBL | A0A0R0GJT2 | 0.0 | A0A0R0GJT2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G04031.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 7e-93 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G073400.1.p |
Entrez Gene | 100800658 |