PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.13G064000.1.p | ||||||||
Common Name | GLYMA_13G064000, LOC100790803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 292aa MW: 33146.1 Da PI: 7.7492 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.5e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++++eq++ Le+ Fe +++ e++ +LAk lgL+ rq+++WFqNrRa++k Glyma.13G064000.1.p 92 KKKRLSQEQVKGLEKSFELGNKLEPERKMQLAKALGLQPRQISIWFQNRRARWK 145 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.5 | 1.2e-40 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rls+eqvk LE+sFe +kLeperK++la++Lglqprq+ +WFqnrRAR+ktkqlEk+ye+Lk+ ++a+k++n++L++++++L++e Glyma.13G064000.1.p 91 EKKKRLSQEQVKGLEKSFELGNKLEPERKMQLAKALGLQPRQISIWFQNRRARWKTKQLEKEYEVLKKLFEAVKADNDSLKAQNQKLHAE 180 69***************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 l++ Glyma.13G064000.1.p 181 LQT 183 986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.2E-18 | 90 | 151 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-19 | 91 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 91 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-15 | 92 | 148 | No hit | No description |
Pfam | PF00046 | 5.4E-16 | 92 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 94 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.6E-6 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.6E-6 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-14 | 147 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MAFPPSHTFM FQTHEDHDPH QLHLRSTSTS LNAFPSFPPH HFQGGGAGAG GFMMKRSMSF 60 SSIEKNNHKN KCDEVHGDDE LSDEGSQLLG EKKKRLSQEQ VKGLEKSFEL GNKLEPERKM 120 QLAKALGLQP RQISIWFQNR RARWKTKQLE KEYEVLKKLF EAVKADNDSL KAQNQKLHAE 180 LQTLKSRDCS ETGTVISLKK ETEGSWSNGS NNSSEINLDL SRTPVMNSPV SSSLNGKTLL 240 PTSLKPTSIT QLLQCSSRSD LQDESFCNMF HNIDEQQNFW PWPDHQQHQF H* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.23221 | 0.0 | cotyledon| hypocotyl| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.13G064000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT095629 | 0.0 | BT095629.1 Soybean clone JCVI-FLGm-19L17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543764.1 | 0.0 | homeobox-leucine zipper protein HAT7 isoform X1 | ||||
Refseq | XP_028196309.1 | 0.0 | homeobox-leucine zipper protein HAT7-like isoform X1 | ||||
Swissprot | Q00466 | 7e-79 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | I1LWJ5 | 0.0 | I1LWJ5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G05270.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15150.1 | 4e-72 | homeobox 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.13G064000.1.p |
Entrez Gene | 100790803 |