PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.13G063300.1.p | ||||||||
Common Name | GLYMA_13G063300, LOC100777630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 381aa MW: 43347 Da PI: 7.8844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.5e-54 | 13 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++ Glyma.13G063300.1.p 13 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRP 101 79***************************.89***************9888999************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++g+ +glkk+Lvfy+gra kg ktdW+mhe+rl Glyma.13G063300.1.p 102 IYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 138 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-57 | 11 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.2 | 12 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-26 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MERNEMERID DVMPGFRFHP TDEELVDFYL KRKIQQKSLP IELIKQVDIY KYDPWDLPKL 60 AGTGEKEWYF YCPRDRKYRN SARPNRVTRA GFWKATGTDR PIYSSEGKCI GLKKSLVFYR 120 GRAAKGMKTD WMMHEFRLPC ISDSSPPKKL SDRSLPPNDS WAICRIFKKT NSLSLAQKAL 180 SLPLISQLPG GIVSDMFTQG LKCHNIGSPA IQFCGDKQDE LHQVSNNAIN NNFSASDIPT 240 YKLINNSTVS KPSPQSPVSD GDLADNFIFY SSWPTKCCTL DPTSMLSPNP DYIEFEDPNQ 300 QHYSGFSINL PQDMKQNMST ETGTKEQDHQ WETTIGMRTT GYPFSLSPPY DAWKASSVAW 360 ESRPCPSDMS TTYSTNKCYT * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-53 | 14 | 172 | 17 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.13G063300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-112 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621473.1 | 0.0 | protein FEZ | ||||
Refseq | XP_028197111.1 | 0.0 | protein FEZ-like | ||||
TrEMBL | A0A445HBZ0 | 0.0 | A0A445HBZ0_GLYSO; Putative NAC domain-containing protein 94 | ||||
TrEMBL | K7LXH4 | 0.0 | K7LXH4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G05350.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39820.1 | 2e-95 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.13G063300.1.p |
Entrez Gene | 100777630 |