PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G063200.1.p
Common NameGLYMA_13G063200, LOC780542
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 334aa    MW: 36759.1 Da    PI: 6.7533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G063200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +++++G+ +Wk++++  g+ R+ k+c++rw +yl
  Glyma.13G063200.1.p 14 KGPWTPEEDIILVSYIQEHGPSNWKAVPANTGLSRCSKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.45.2e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
  Glyma.13G063200.1.p  67 RGNFTDQEEKMIIHLQALLGNR-WAAIAAYLP-QRTDNDIKNYWNTYL 112
                          89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.133961IPR017930Myb domain
SuperFamilySSF466893.91E-3011108IPR009057Homeodomain-like
SMARTSM007176.9E-151363IPR001005SANT/Myb domain
PfamPF002493.0E-161461IPR001005SANT/Myb domain
CDDcd001672.90E-111661No hitNo description
PROSITE profilePS5129424.76462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-2565117IPR009057Homeodomain-like
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002493.4E-1567112IPR001005SANT/Myb domain
CDDcd001675.27E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPSNWKAV PANTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIAAYLPQRT DNDIKNYWNT YLKKKLNKLE  120
AGSDQGHNIG VSVSQPMSRG QWERRLQTDI RMAKRALIEA LSSNKASSSS TLLLAESNSN  180
LSSENSIFYN SNTNKPTTQS MCYASSADNI ARLLKGWMKN TPKLASCAAS AVTQNSFNNL  240
AGADTAFSEG ITTTKGSTST STVELSETFD SLFGYESLDY SSNSEFSPSL SPEATPFQDE  300
SKPDITADGI DMPFSLLEKW LLDDAACQEK LGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261411627128MYB TRANSFORMING PROTEIN
1mse_C9e-27141164105C-Myb DNA-Binding Domain
1msf_C9e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.300270.0root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G063200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0961950.0BT096195.1 Soybean clone JCVI-FLGm-20D5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341097.10.0MYB transcription factor MYB53
SwissprotP813921e-109MYB06_ANTMA; Myb-related protein 306
TrEMBLI1LWK20.0I1LWK2_SOYBN; Uncharacterized protein
STRINGGLYMA13G05370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.18e-98myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]