PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G062900.1.p
Common NameGLYMA_13G062900, LOC100814730
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 332aa    MW: 35583.5 Da    PI: 8.0148
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G062900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.92e-3256113359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          +v+YkeClkNh aslGgha+DGCgEfmps+ ++  +++++kCaACgCHRnFHRre+ee
  Glyma.13G062900.1.p  56 AVVYKECLKNHVASLGGHALDGCGEFMPSPAATaDDPSSIKCAACGCHRNFHRREPEE 113
                          689**************************9999889*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2757111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2257119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5459110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.34E-20175246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30176247IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-27185242IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEIITPTATA TNATAKSPEP DIETMTRIHQ NPNPNPKPVS FSNGVLKRHH VNHRAAVVYK  60
ECLKNHVASL GGHALDGCGE FMPSPAATAD DPSSIKCAAC GCHRNFHRRE PEESPISPAT  120
HHVLEYRPHH RHHPPPPHRS PNSASPPPIS SYPSAPHMLL ALSGGAGLSV APENTAAPAP  180
PHHSRKRFRT KFTQEQKEKM HEFADKVGWK MQRRDEEMVM EFCNEIGVDR GVLKVWMHNN  240
KNTFAKKDNL NGNSIGNVAI VSANGVAPIG AVGSATVRSS VHVHEHEHGG INGNGSGDNN  300
HNPLGSRDVN EYENDSGTNG GGGTNGSSSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211842431675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.17680.0cotyledon| flower| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G062900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543789.10.0zinc-finger homeodomain protein 9
RefseqXP_028195824.10.0zinc-finger homeodomain protein 9-like
SwissprotQ9LXG07e-72ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A445HC010.0A0A445HC01_GLYSO; Zinc-finger homeodomain protein 8
TrEMBLI1LWK40.0I1LWK4_SOYBN; Uncharacterized protein
STRINGGLYMA13G05420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-65homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]