PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G045500.1.p | ||||||||
Common Name | GLYMA_13G045500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 301aa MW: 34121.3 Da PI: 4.4983 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.1 | 1.1e-13 | 9 | 48 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k i+n++ r+ tf Rr+ ++KK +E S+LC++e+++i++ Glyma.13G045500.1.p 9 KHISNERSRKKTFMERRKVLIKKISEFSTLCGVEACLIVY 48 68*************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.456 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.69E-16 | 2 | 49 | No hit | No description |
PRINTS | PR00404 | 9.6E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGRARISLKH ISNERSRKKT FMERRKVLIK KISEFSTLCG VEACLIVYDD GNGDIEPVTC 60 PKDPVLAHSI LQNYEFQKNQ RPPKKFGIQD FVEDRKNIIE AEISKVHKEI TNIKYPTSDP 120 SFINMEEDQL RAFIALVDAK IRTCDHSLKN MHQSEANFMQ NMAWGSASSS HPTPMEPLNN 180 NGRVDVTNSI DQVYEAMQLV DAPFSYIPDM VQKSFNCLQN ISQSQPILDV EDEMVGFSNR 240 VDVSLDTTNQ IADLLDWFDG PIIGWSDLVD WTSQPDESQN EQQGGGDLDG FQTECYNLNF 300 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52574 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G045500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093998 | 0.0 | BT093998.1 Soybean clone JCVI-FLGm-14K20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001356230.1 | 0.0 | agamous-like MADS-box protein | ||||
TrEMBL | I1LX34 | 0.0 | I1LX34_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G07720.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 | Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-19 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G045500.1.p |