PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G038500.1.p
Common NameGLYMA_13G038500, LOC100817205
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 327aa    MW: 36467.2 Da    PI: 5.6253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G038500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W teEde+lv +v+++G+g+W++++++ g+ R++k+c++rw +yl
  Glyma.13G038500.1.p 14 KGPWKTEEDEKLVAYVERHGPGNWRSVPAKAGLQRCGKSCRLRWINYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.35.7e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++ eE+  +v+++ +lG++ W+ Ia++++ +Rt++++k++w++
  Glyma.13G038500.1.p  67 RGSFSLEEHRTIVQLHSLLGNK-WSIIAAHLP-KRTDNDIKNYWNT 110
                          899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.466965IPR017930Myb domain
SuperFamilySSF466892.1E-3011108IPR009057Homeodomain-like
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002497.3E-171461IPR001005SANT/Myb domain
CDDcd001671.61E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129420.43366116IPR017930Myb domain
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002492.1E-1467110IPR001005SANT/Myb domain
CDDcd001671.61E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRMPCCEKV GLNKGPWKTE EDEKLVAYVE RHGPGNWRSV PAKAGLQRCG KSCRLRWINY  60
LNPNIKRGSF SLEEHRTIVQ LHSLLGNKWS IIAAHLPKRT DNDIKNYWNT NIKKGLIGKG  120
LDPLTYKPIK SNTFQAYGGN FLDPSIDTTN MNHVAQSESA QIEAEARESM LQFGSLPSHL  180
PGLILSKIPT QPFPSSASLL TQRINTTYDM YALVLATNHL DLHPPPFTDP ESFPSRKLLP  240
SVSTSVGQST DPESSLSYDG IGYNMIDNSS SQMQMTMECY ATNFEDDDVM IALEAFGIAR  300
FEGIQELFDG PTTMEDLINE SFERDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-30121142103C-Myb DNA-Binding Domain
1msf_C1e-30121142103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G038500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543953.10.0transcription factor MYB41
RefseqXP_028197185.10.0transcription factor MYB41-like
SwissprotQ9LXF11e-72MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0R0GI630.0A0A0R0GI63_SOYBN; Uncharacterized protein
TrEMBLA0A445HB460.0A0A445HB46_GLYSO; Transcription factor MYB16
STRINGGLYMA13G09010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3608522
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.14e-69myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]